Downloading FCP-INDI Neuroimaging Data from Amazon S3¶
Introduction¶
Data for the 1000 Functional Connectomes Project / INDI are now available for download from an Amazon Web Services S3 bucket.
There are file transfer programs that can handle S3 natively and will allow you to navigate through the data using a file browser. Cyberduck is one such program that works with Windows and Mac OS X. Cyberduck also has a command line version that works with Windows, Mac OS X, and Linux. Instructions for using Cyberduck are as follows:
- Open Cyberduck and click on Open Connection.
- Set the application protocol in the dropdown menu to S3 (Amazon Simple Storage Service).
- Set the server to s3.amazonaws.com.
- Check the box labelled Anonymous Login.
- Expand the More Options tab and set Path to fcp-indi/data/Projects.
- Click Connect.
The end result should appear as follows:
Accessing Individual Datasets¶
Once you have navigated to fcp-indi/data/Projects, you will be presented with individual directories for all of the datasets we have available:
| Dataset Name | Location in S3 Bucket | Raw Data Available? | Preprocessed Data Available? |
| Addiction Connectome Preprocessed Initiative (ACPI) | fcp-indi/data/Projects/ACPI | Yes | Yes |
| ADHD-200 | fcp-indi/data/Projects/ADHD200 | Yes | Yes |
| Brain Genomics Superstruct Project (BGSP) | fcp-indi/data/Projects/BGSP | Yes | Coming Soon! |
| Consortium for Reliability and Reproducibility (CoRR) | fcp-indi/data/Projects/CORR | Yes | Yes |
| Multimodal Resource for Studying Information Processing in the Developing Brain (MIPDB) | fcp-indi/data/Projects/EEG_Eyetracking_CMI_data | Yes | Yes |
| Healthy Brain Network | fcp-indi/data/Projects/HBN (uncompressed) fcp-indi/data/Archives/HBN (compressed) |
Yes | Yes |
| Healthy Brain Network Serial Scanning Initiative (HBN-SSI) | fcp-indi/data/Projects/HBNSSI | Yes | Coming Soon! |
| Enhanced Nathan Kline Institute Rockland Sample | fcp-indi/data/Projects/RocklandSample | Yes | NO |
| Resting state of the static hypnotic state. | fcp-indi/data/Projects/INDI/HypnosisBarrios | Yes | Coming Soon! |
| Southwest University Longitudinal Imaging Multimodal (SLIM) Brain Data Repository | fcp-indi/data/Projects/INDI/SLIM | Yes | Coming Soon! |
| Southwest University Adult Lifespan Dataset (SALD) | fcp-indi/data/Projects/INDI/SALD | Yes | Coming Soon! |
| Anatomical Tracings of Lesions After Stroke (ATLAS) R1.1 | fcp-indi/data/Projects/INDI/ATLAS | Yes | Coming Soon! |
| Max Planck Institut Leipzig Mind-Brain-Body Dataset | openneuro/ds000221/ds000221_R1.0.0/compressed | Yes | Coming Soon! |
| Parkinson's Disease Datasets | fcp-indi/data/Projects/INDI/umf_pd | Yes | Coming Soon! |
Generally, subdirectories within these datasets conform to the following scheme:
- RawDataBIDS : Raw data organized in the BIDS format.
- RawDataTars : Aggregated individualized datasets in the BIDS format shared as tarred and gzipped files of approximately 2-4 GB each.
- Outputs : Derivatives of raw data (such as outputs from Freesurfer, field map-corrected data, C-PAC outputs, and preprocessed data).
